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MidAtlantic Bioinformatics Conference
Friday November 7, 2025
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Large language models for phenotype concept recognition from clinical notes on genetic diseases
Jingye Yang, PhD, UPenn & CHOP Cong Liu, PhD, Columbia University Wendy Deng, UPenn Da Wu, PhD, UPenn Chunhua Weng, PhD, Columbia...
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Oct 4, 20231 min read
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MULTIMODAL MACHINE LEARNING COMBINING CLINICAL TEXTS AND FACIAL IMAGES IMPROVE DIAGNOSIS OF RARE ...
Da Wu1, Jingye Yang1, Kai Wang1 Detailed Affiliations 1Children's Hospital of Philadelphia, Philadelphia, PA, USA. Poster # 28...
vitod1
Oct 4, 20232 min read
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Identifying Chronic Tic Disorder subtypes using clinical diagnostic data
Subramanian, Krishnamurthy*, Tourette International Collaborative Genetics (TIC Genetics) group, and Jinchuan Xing* * Department of...
vitod1
Oct 4, 20232 min read
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Analysis of Multi-modal Spatial Omics with MISO
Kyle Coleman, MS: University of Pennsylvania, DBEI Jian Hu, PhD: Emory University, Department of Human Genetics David Zhang, PhD:...
vitod1
Oct 4, 20232 min read
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Assessing the expression of Long INterspersed Elements (LINEs) via long-read sequencing in diverse..
Karleena Rybacki, BS, 1,2, Mingyi Xia, MS, 1,2, Mian Umair Ahsan, MS,2, Jinchuan Xing, Ph.D.,3,4, Kai Wang, Ph.D.,1,2 1 Department of...
vitod1
Oct 4, 20232 min read
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MIS: A Multimodal Measure of Human Protein Intolerance to Functional Missense Variations
Taha Mohseni Ahooyi, PhD (1) Benjamin Stear, MSc (1) Deanne Taylor, PhD (1,2) (1) Department of Biological & Health Informatics...
vitod1
Oct 4, 20232 min read
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Precise tracing of mitochondrial transfer between cancer and T cells at single cell resolution
Hongyi Zhang, Xuexin Yu, Jianfeng Ye, Anli Zhang and Bo Li Poster # 17 Mitochondrion (MT) as the energy-producing organelle participates...
vitod1
Oct 4, 20231 min read
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CytoMethIC: A Comprehensive R/Bioconductor Package for DNA Methylation-based Human Cancer Classif-..
Fanale, Jacob. Undergraduate Research Intern. Zhou, Wanding, PhD. Principal Investigator. Goldberg, David, PhD Candidate. Li, Marilyn,...
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Oct 4, 20231 min read
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Utilizing nullomers in cell-free RNA for cancer detection
Austin Montgomery BS 1, Georgios Christos Tsiatsianis MS 1,2, Ioannis Mouratidis MS 1, Candace S.Y. Chan MS 3, Maria Athanasiou,...
vitod1
Oct 4, 20232 min read
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Redcarpet: A Tool for Rapid Recombination Detection Amidst Expanding Genomic Databases
Ahmed M. Moustafa 1,2,3, Erin Theiller 1, Arnav Lal 4, Andries Feder 5, Apurva Narechania 6, Paul J. Planet 2,5,6 1- Division of...
vitod1
Oct 4, 20232 min read
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A network-based comparison of sex-stratified disease-variant associations reveals genotype-by-sex...
Sriram V, MA - University of Pennsylvania Woerner J - University of Pennsylvania Ahn Y, PhD - Indiana University Bloomington Kim D,...
vitod1
Oct 4, 20232 min read
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Genetic and methylomic interrogation of brain cell-type shifts in autism, schizophrenia, and Alzheim
Chloe X Yap1,2,3,4, Daniel D Vo6,17,18, Matthew G. Heffel5, Arjun Bhattacharya7,8, Cindy Wen3,4,5, Yuanhao Yang1,2, Kathryn E Kemper2,...
vitod1
Oct 4, 20232 min read
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Using Machine Learning With Single Cell Multi-modal Bone Marrow Data to Understand the Mechanisms ..
Wesley V Wilson 12, Zoey Kline 2, Fei Mao 2, Alfred L Garfall 34, Dexiu Bu 5, Elena J Orlando 5, Jennifer L Brogdon 5, Adam D Cohen 34,...
vitod1
Oct 4, 20232 min read
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Investigating Genetic Risk Factors Associated with Autism Spectrum Disorder and Language Impairment
Lodi, M. K. (1), Alibutud, R. (1), Hansali, S. (1), Cao, X. (1), Zhou, A (1)., Flax, J. F. (1), Gwin, C. (1), Wilson, S. (1), Robinson,...
vitod1
Oct 4, 20232 min read
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Inferring Gene Regulatory Networks from Case Versus Control scRNA-seq Datasets
Madison Dautle1, Ruoyu Chen2, Shaoqiang Zhang3, Yong Chen1* 1 Department of Biological and Biomedical Sciences, Rowan University, NJ...
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Oct 4, 20232 min read
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Enriching representation learning using 53 million patient notes through human phenotype ontology...
Maryam Daniali, Peter D. Galer, David Lewis-Smith, Shridhar Parthasarathy, Edward Kim, Dario D. Salvucci, Jeffrey M. Miller, Scott Haag,...
vitod1
Oct 4, 20232 min read
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Machine Learning Model Predicts the Likelihood of Achieving Return of Spontaneous Circulation During
Takayuki Sueishi, Hunter Gaudio, Luiz E. V. Silva, Tiffany S. Ko, Fuchiang Tsui, Ryan W. Morgan, Todd J. Kilbaugh Poster # 77 In the...
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Oct 4, 20232 min read
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KnowYourCG: automated discovery of biological and technical links from DNA methylation data
David Goldberg1,2, Daniel Atkins1, Wubin Ding1, Ethan Moyer1, Wanding Zhou1,2 1Center for Computational and Genomic Medicine, The...
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Oct 4, 20231 min read
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Multimodal profiling of chromatin accessibility and gene expression in single cells enables the ...
Eunji Ha, PhD (1,2,3,4), Han Yuan, PhD (5), Amin Abedini, MD, PhD (1,2,3,4), Konstantin A. Kloetzer, MD (1,2,3,4), Andrea Sanchez...
vitod1
Oct 4, 20232 min read
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High precision genomic epidemiology of Plasmodium falciparum malaria in sub-Saharan Africa by...
1. Alfred Hubbard, BS, UNC Charlotte 2. Cheikh C. Dieng, PhD, Drexel University 3. Elizabeth Hemming-Schroeder, PhD, Colorado State...
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Oct 4, 20231 min read
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