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MidAtlantic Bioinformatics Conference
Friday November 7, 2025
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Expanding the pool of Transplantable Livers using Molecular profiling and Histopathological Analysis
Srivastava A PhD, Manchel A BS, Waters J BS, Ambelil M MD, Barnhart B. K PhD, Hoek J. B PhD, Shah A.P MD, Vadigepalli R PhD Poster # 52...
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Oct 4, 20232 min read
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ContextSV: A novel computational method for calling structural variants and integrating information
Jonathan Elliot Perdomo PhD Candidate Affiliations: 1. School of Biomedical Engineering, Drexel University, Philadelphia, PA 19104,...
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Oct 4, 20232 min read
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Top 15 Attributes for the Design of Advanced Health Dashboards
Melina Malkani, High School Student, Bullis School Eesha Madan, College Student, George Washington University Arav Madan, High School...
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Oct 4, 20231 min read
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A python program for automated census of protein domains for comparative proteomics.
Santosh Kumar H. S., Chandrashekhar C. R., Lavan S. Patil, and Sriraksha Prakash Poster Not on Display Analysis of protein sequences...
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Oct 4, 20232 min read
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Gene expression analysis across the inflammatory models: A step towards biomarker discovery
Dr.H S Santosh Kumar Associate Professor, Department of Biotechnology, Kuvempu University, Karnataka, India Deepthi S Ph.D. Student,...
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Oct 4, 20232 min read
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Spatial mapping of stress induced RNA binding protein localization changes using pooled gene tagging
Tomer Lapidot*, Saranya Santhosh Kumar*, Yevgeniy Serebrenik, Stephanie Sansbury and Ophir Shalem Poster # 4 RNA binding proteins (RBPs)...
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Oct 4, 20231 min read
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A computational pipeline for processing single-cell bisulfite sequencing data
Uzun Y 1,2,3, Yu W4,5, Chen C4, Wu H 6,7 and Tan K ,4,5,6,7 1 Department of Pediatrics, Pennsylvania State University, College of...
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Oct 4, 20231 min read
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Translational Bioinformatics
Qingwang Chen1#, Xiaorou Guo1#, Haiyan Wang1#, Shanyue Sun2, He Jiang1, Peipei Zhang1, Erfei Shang1, Ruolan Zhang1, Zehui Cao1, Quanne...
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Oct 4, 20232 min read
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DEVELOPMENT OF NEW METHODS FOR PURE PLASMID DNA ISOLATION WITHOUT USING COMMERCIAL KITS
Avsar, A.R. (2023) I am responsible for conducting experiments in the laboratory. Additionally, I contribute to report writing and...
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Oct 4, 20232 min read
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Impact of DNA repeat silencing on ATR inhibitor-driven genomic breaks
Rahul Shubhra Mandal1*, Nishita Shastri2*, Muzaffer Kassab1*, Chandan Das1, Piyush Borole1, Jonathan Schug3, Irfan A. Asangani1 and Eric...
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Oct 4, 20232 min read
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Characterization of all small RNAs in and comparisons across cultured megakaryocytes and platelets..
Stepan Nersisyan 1, Emilie Montenont 2, Phillipe Loher 1, Elizabeth A. Middleton 2, 3, Robert Campbell 2, 4, Paul Bray 2, 5, Isidore...
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Oct 4, 20232 min read
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KSFinder - A knowledge graph model for link prediction of novel phosphorylated substrates of kinases
Manju Anandakrishnan1, Karen Ross2, Chuming Chen1, Vijay Shanker 1, Julie Cowart1, Cathy H. Wu1,2 1 Center for Bioinformatics and...
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Oct 4, 20232 min read
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Assessing the expression of Long INterspersed Elements (LINEs) via long-read sequencing in diverse
Karleena Rybacki, BS, 1,2, Mingyi Xia, MS, 1,2, Mian Umair Ahsan, MS,2, Jinchuan Xing, Ph.D.,3,4, Kai Wang, Ph.D.,1,2 1 Department of...
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Oct 4, 20232 min read
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Rare variants enhance the ability to identify associated phenotypes in disease networks
Rasika Venkatesh*1,2, Jakob Woerner*1,2, Vivek Sriram1,2, Dokyoon Kim2,3 1. Genomics and Computational Biology Graduate Group,...
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Oct 4, 20232 min read
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Association of surfactant protein genetic variants with risk of hospitalization in COVID-19 positive
Lauren Mazur, BS1; Keenan Anderson-Fears, BS2; Dajiang Liu, PhD2; Chintan K Gandhi, MD1 1The Pennsylvania State College of Medicine....
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Oct 4, 20232 min read
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Maximally Diverse Haemophilus influenzae isolates Undergo Varied Transcriptional Responses during Bi
Evangeline Williams MS, Ari Gordon PhD, Jocelyn Hammond MS, Rachel L. Ehrlich MS, Azad Ahmed PhD, Bhaswati Sen PhD, Garth D. Ehrlich PhD,...
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Oct 4, 20231 min read
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Enhancing Hi-C resolution data with computational construction of three-dimensional chromatin ensemb
Angel, J.C., B.Sc. (Columbia University, New York Genome Center) El Amraoui, N., M.Sc. (New York Genome Center) Gürsoy, G., Ph.D....
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Oct 4, 20231 min read
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Empowering Immunogenetic Analysis with Biofilter 3.0 via Enhanced Annotation and Filtering Capabilit
Van Q. Truong, Xueqiong Li, Scott Dudek, Rasika Venkatesh, E. John Wherry, Marylyn D. Ritchie Poster # 22 Autoimmune diseases are a...
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Oct 4, 20231 min read
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Closed-loop modeling of central and intrinsic cardiac nervous system circuit dysfunction following
Michelle M. Gee (1,2), Abraham M. Lenhoff (1), James S. Schwaber (1,2), Rajanikanth Vadigepalli (1,2) 1 Department of Chemical and...
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Oct 4, 20232 min read
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Regulation of Neuronal Maturation through EZH1-Driven H3K27me3 Deposition
Thomas Roule, CHOP Carolina Gracia-Diaz, CHOP Jasmine Akoto, CHOP Naiara Akizu, CHOP Poster # 25 Mutations in chromatin remodeler...
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Oct 4, 20231 min read
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